# CWLcon 2021
**URL:** https://cwl.discourse.group/c/cwlcon-2021/9.md
[Latest](https://cwl.discourse.group/latest.md) · [Categories](https://cwl.discourse.group/categories.md)
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## [About the CWLcon 2021 category](https://cwl.discourse.group/t/about-the-cwlcon-2021-category/257)
**Author:** [@tetron](https://cwl.discourse.group/u/tetron)\
**Replies:** 0
The most up to date information about the 2021 CWL Conference is at https://github.com/common-workflow-language/common-workflow-language/wiki/2021-CWL-Mini-Conference including information on how to sign up for the live …
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## [Building a Clinically Validated De-novo Assembly Workflow with CWL and Galaxy](https://cwl.discourse.group/t/building-a-clinically-validated-de-novo-assembly-workflow-with-cwl-and-galaxy/262)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 1\
**Last updated:** [February 11, 2021, 4:27pm UTC](https://cwl.discourse.group/t/building-a-clinically-validated-de-novo-assembly-workflow-with-cwl-and-galaxy/262 "2021-02-11T16:27:52Z")
Presenter: Andrey Tovchigrechko, Kite Pharma Session 1 (Americas-EMEA) Monday, February 8th 14:20 UTC Summary: “ NGS-MSTB is a pipeline for assembling next generation sequencing reads from large scale viral and bacteri…
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## [SABER: Scalable Analytics for Brain Exploration Research](https://cwl.discourse.group/t/saber-scalable-analytics-for-brain-exploration-research/278)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 0\
**Last updated:** [February 3, 2021, 1:22pm UTC](https://cwl.discourse.group/t/saber-scalable-analytics-for-brain-exploration-research/278 "2021-02-03T13:22:16Z")
Presenter: Erik Johnson, Daniel Xenes, William R. Gray Roncal, Johns Hopkins University APL Session 1 (Americas-EMEA) Monday, February 8th 15:50 UTC Summary: “Emerging neuroimaging datasets (collected with imaging tech…
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## [Sapporo: An Implementation Of Workflow Execution Service](https://cwl.discourse.group/t/sapporo-an-implementation-of-workflow-execution-service/277)
**Author:** [@inutano](https://cwl.discourse.group/u/inutano)\
**Replies:** 0\
**Last updated:** [February 3, 2021, 10:58am UTC](https://cwl.discourse.group/t/sapporo-an-implementation-of-workflow-execution-service/277 "2021-02-03T10:58:08Z")
Presenter: Tazro Ohta (@inutano), Database Center for Life Science Session 2 (EMEA-APAC) Tuesday, February 9th 07:20 UTC Summary: “Sapporo is an open-source implementation of Workflow Execution Service (WES), the Globa…
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## [How We Test, Run and Monitor Software Tools and Workflows on AWS cloud using Tibanna](https://cwl.discourse.group/t/how-we-test-run-and-monitor-software-tools-and-workflows-on-aws-cloud-using-tibanna/276)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 0\
**Last updated:** [February 3, 2021, 6:57am UTC](https://cwl.discourse.group/t/how-we-test-run-and-monitor-software-tools-and-workflows-on-aws-cloud-using-tibanna/276 "2021-02-03T06:57:35Z")
Presenter: Soo Lee, Harvard Medical School Session: Session 1 (Americas-EMEA) Monday, February 8th 14:55 UTC Summary: “Tibanna is an open source software tool that we developed for running and monitoring workflows on t…
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## [A Brief Overview of Toil, a CWL Runner](https://cwl.discourse.group/t/a-brief-overview-of-toil-a-cwl-runner/271)
**Author:** [@DailyDreaming](https://cwl.discourse.group/u/DailyDreaming)\
**Replies:** 0\
**Last updated:** [February 2, 2021, 3:47am UTC](https://cwl.discourse.group/t/a-brief-overview-of-toil-a-cwl-runner/271 "2021-02-02T03:47:13Z")
Presenter: Lon Blauvelt (@DailyDreaming), UC Santa Cruz Genomics Institute Session 3 (APAC- Americas) Wednesday, February 10th 01:00 UTC Summary: “A look into supported batch systems, current autoscaling infrastructur…
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## [CWL @UMCCR using Illumina's Connected Analytics (ICA)](https://cwl.discourse.group/t/cwl-umccr-using-illuminas-connected-analytics-ica/272)
**Author:** [@skanwal](https://cwl.discourse.group/u/skanwal)\
**Replies:** 0\
**Last updated:** [February 2, 2021, 3:52am UTC](https://cwl.discourse.group/t/cwl-umccr-using-illuminas-connected-analytics-ica/272 "2021-02-02T03:52:35Z")
Presenters: Sehrish Kanwal (@skanwal) and Alexis Lucattini (@alexiswl), The University of Melbourne Centre for Cancer Research Session 3 (APAC-Americas) Wednesday, February 10th 01:15 UTC Summary: “CWL greatly improves…
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## [ML Processing Pipelines using CWL, Deployment in Context of Research Teams and OGC-API Integration](https://cwl.discourse.group/t/ml-processing-pipelines-using-cwl-deployment-in-context-of-research-teams-and-ogc-api-integration/269)
**Author:** [@fmigneault](https://cwl.discourse.group/u/fmigneault)\
**Replies:** 0\
**Last updated:** [February 2, 2021, 3:38am UTC](https://cwl.discourse.group/t/ml-processing-pipelines-using-cwl-deployment-in-context-of-research-teams-and-ogc-api-integration/269 "2021-02-02T03:38:31Z")
Presenter: Francis Charette Migneault, Computer Research Institute of Montréal (CRIM) Session 3 (APAC- Americas) Wednesday, February 10th 00:25 UTC Summary: "Overview of Machine Learning (ML) processing pipelines using…
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## [A Way to Know How Well an Engine Supports Features in CWL Spec (Check the Conformance Badges!)](https://cwl.discourse.group/t/a-way-to-know-how-well-an-engine-supports-features-in-cwl-spec-check-the-conformance-badges/268)
**Author:** [@tom-tan](https://cwl.discourse.group/u/tom-tan)\
**Replies:** 0\
**Last updated:** [February 1, 2021, 9:48pm UTC](https://cwl.discourse.group/t/a-way-to-know-how-well-an-engine-supports-features-in-cwl-spec-check-the-conformance-badges/268 "2021-02-01T21:48:05Z")
Presenter: Tomoya Tanjo, National Institute of Informatics (Tokyo, Japan) Session 2 (EMEA-APAC) Tuesday, February 9th 08:40 UTC Summary: "For workflow users, there is a big challenge to choose appropriate workflow engi…
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## [StreamFlow: Cross Breeding Cloud with HPC](https://cwl.discourse.group/t/streamflow-cross-breeding-cloud-with-hpc/266)
**Author:** [@GlassOfWhiskey](https://cwl.discourse.group/u/GlassOfWhiskey)\
**Replies:** 0\
**Last updated:** [February 1, 2021, 5:23pm UTC](https://cwl.discourse.group/t/streamflow-cross-breeding-cloud-with-hpc/266 "2021-02-01T17:23:35Z")
Presenter: Iacopo Colonnelli, Università di Torino Session 2 (EMEA-APAC) Tuesday, February 9th 07:35 UTC Summary: “Workflows are among the most commonly used tools in a variety of execution environments. Many of them t…
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## [CWL as a Medium for Reproducible Analyses; and a Web-based CWL Authoring Tool](https://cwl.discourse.group/t/cwl-as-a-medium-for-reproducible-analyses-and-a-web-based-cwl-authoring-tool/265)
**Author:** [@srp33](https://cwl.discourse.group/u/srp33)\
**Replies:** 0\
**Last updated:** [February 1, 2021, 5:07pm UTC](https://cwl.discourse.group/t/cwl-as-a-medium-for-reproducible-analyses-and-a-web-based-cwl-authoring-tool/265 "2021-02-01T17:07:18Z")
Presenter: Stephen Piccolo (@srp33), Brigham Young University Session 1 (Americas-EMEA) Monday, February 8th 16:20 UTC Summary: “In this talk, I describe my experiences as a CWL newbie and illustrate how CWL tools and …
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## [CWL-Airflow: Recent Updates & Changes](https://cwl.discourse.group/t/cwl-airflow-recent-updates-changes/264)
**Author:** [@obi\_wan\_kenobi](https://cwl.discourse.group/u/obi_wan_kenobi)\
**Replies:** 0\
**Last updated:** [February 1, 2021, 4:59pm UTC](https://cwl.discourse.group/t/cwl-airflow-recent-updates-changes/264 "2021-02-01T16:59:25Z")
Presenter: Michael Kotliar (@obi\_wan\_kenobi), Cincinnati Children’s Hospital Medical Center Session 1 (Americas-EMEA) Monday, February 8th 15:35 UTC Summary: “CWL-Airflow is a Python package that adds support for CWL t…
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## [Scattering CWL across Tabular Samples; and Interactive Computing Environments from CWL](https://cwl.discourse.group/t/scattering-cwl-across-tabular-samples-and-interactive-computing-environments-from-cwl/263)
**Author:** [@nsheff](https://cwl.discourse.group/u/nsheff)\
**Replies:** 0\
**Last updated:** [February 1, 2021, 4:51pm UTC](https://cwl.discourse.group/t/scattering-cwl-across-tabular-samples-and-interactive-computing-environments-from-cwl/263 "2021-02-01T16:51:41Z")
Presenter: Nathan Sheffield (@nsheff), University of Virginia Session 1 (Americas-EMEA) Monday, February 8th 15:15 UTC Summary: “This talk introduces two projects that provide new capabilities relevant to CWL. First, w…
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## [Metagenomic Data Analysis Workflows In CWL](https://cwl.discourse.group/t/metagenomic-data-analysis-workflows-in-cwl/261)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 0\
**Last updated:** [February 1, 2021, 2:59pm UTC](https://cwl.discourse.group/t/metagenomic-data-analysis-workflows-in-cwl/261 "2021-02-01T14:59:43Z")
Presenter: Juan Caballero, EMBL - EBI Session 1 (Americas-EMEA) Monday, February 8th 14:40 UTC Summary: “Metagenomics analysis requires the use of complex pipelines, in this talk, I briefly explain how we are using CWL…
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## [CWL for Software Medical Devices](https://cwl.discourse.group/t/cwl-for-software-medical-devices/273)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 0\
**Last updated:** [February 2, 2021, 3:58am UTC](https://cwl.discourse.group/t/cwl-for-software-medical-devices/273 "2021-02-02T03:58:21Z")
Presenter: Paul Wighton, CorticoMetrics LLC Session 3 (APAC- Americas) Wednesday, February 10th 01:50 UTC Summary: “This talk describes how CorticoMetrics was able to translate open-source, academic software to clinic…
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## [CWL Intro + CWL 1.2](https://cwl.discourse.group/t/cwl-intro-cwl-1-2/285)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 0\
**Last updated:** [February 8, 2021, 1:25pm UTC](https://cwl.discourse.group/t/cwl-intro-cwl-1-2/285 "2021-02-08T13:25:17Z")
Presenter: Michael R. Crusoe, CWL Project, ELIXIR-NL Summary: “Introduction to the CWL project, the CWL standards, and what’s new in CWL v1.2” Slides: 2021-02-08 CWL Intro + CWL 1.2 @ CWL Conference - Google Slides …
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## [Writing Portable CWL & Rabix Benten update](https://cwl.discourse.group/t/writing-portable-cwl-rabix-benten-update/267)
**Author:** [@kaushik-work](https://cwl.discourse.group/u/kaushik-work)\
**Replies:** 0\
**Last updated:** [February 1, 2021, 6:57pm UTC](https://cwl.discourse.group/t/writing-portable-cwl-rabix-benten-update/267 "2021-02-01T18:57:41Z")
Presenter: Kaushik Ghose (@kaushik-work), Seven Bridges Session 1 (Americas-EMEA) Monday, February 8th 16:05 UTC Summary: “This talk introduces some best practices for writing CWL such that it will run as expected on m…
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## [Publishing workflows in WorkflowHub.eu using CWL and packaging with RO-Crate](https://cwl.discourse.group/t/publishing-workflows-in-workflowhub-eu-using-cwl-and-packaging-with-ro-crate/293)
**Author:** [@stain](https://cwl.discourse.group/u/stain)\
**Replies:** 0\
**Last updated:** [February 9, 2021, 6:33am UTC](https://cwl.discourse.group/t/publishing-workflows-in-workflowhub-eu-using-cwl-and-packaging-with-ro-crate/293 "2021-02-09T06:33:53Z")
Presenter: Stian Soiland-Reyes @stain , University of Manchester Summary: “Stian Soiland-Reyes presents the workflow registry WorkflowHub.eu and how it uses CWL to represent multiple types of workflows, which are packag…
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## [Publishing CWL Workflows: Workflows for Publishing Workflows, The GigaScience Experience](https://cwl.discourse.group/t/publishing-cwl-workflows-workflows-for-publishing-workflows-the-gigascience-experience/270)
**Author:** [@ScottBGI](https://cwl.discourse.group/u/ScottBGI)\
**Replies:** 1\
**Last updated:** [February 5, 2021, 11:12am UTC](https://cwl.discourse.group/t/publishing-cwl-workflows-workflows-for-publishing-workflows-the-gigascience-experience/270 "2021-02-05T11:12:46Z")
Presenter: Scott Edmunds @ScottBGI , GigaScience Session 3 (APAC-Americas) Wednesday, February 10th 00:50 UTC Summary: “The final part of any research workflow is dissemination, and the current scientific publishing wo…