# CWLcon 2022
**URL:** https://cwl.discourse.group/c/cwlcon-2022/11.md
[Latest](https://cwl.discourse.group/latest.md) · [Categories](https://cwl.discourse.group/categories.md)
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## [About the CWLcon 2022 category](https://cwl.discourse.group/t/about-the-cwlcon-2022-category/518)
**Author:** [@melibleq](https://cwl.discourse.group/u/melibleq)\
**Replies:** 0
This category gathers all posts related to the 2022 CWL Conference (Feb 28 - Mar 4). Each talk presented at the conference will be posted here with its summary and a link to the video presentation. Everyone is encourage…
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## [Using CWL at scale in the Genomic Data Commons](https://cwl.discourse.group/t/using-cwl-at-scale-in-the-genomic-data-commons/546)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 0\
**Last updated:** [February 27, 2022, 2:46pm UTC](https://cwl.discourse.group/t/using-cwl-at-scale-in-the-genomic-data-commons/546 "2022-02-27T14:46:08Z")
Authors: Shenglai Li, Kyle Hernandez, Zhenyu Zhang Session 1 (Americas-EMEA) Monday, February 28th, 14:05 UTC Summary: "The National Cancer Institute’s Genomic Data Commons (GDC) has been using CWL since 2016. We have …
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## [Japanese Community Panel](https://cwl.discourse.group/t/japanese-community-panel/573)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 0\
**Last updated:** [March 3, 2022, 12:21pm UTC](https://cwl.discourse.group/t/japanese-community-panel/573 "2022-03-03T12:21:30Z")
Participants: Tazro Inutano Ohta (@inutano) slides, Matrix account Tomoya Tanjo (@tom-tan) slides, GitHub profile, Matrix Account Tsuyoshi Hachiya: slides, Matrix account Manabu ISHII (@manabuishii) GitHub profile, M…
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## [OpenWDL to CWL Translation](https://cwl.discourse.group/t/openwdl-to-cwl-translation/570)
**Author:** [@Th3nn3ss](https://cwl.discourse.group/u/Th3nn3ss)\
**Replies:** 0\
**Last updated:** [March 2, 2022, 8:56pm UTC](https://cwl.discourse.group/t/openwdl-to-cwl-translation/570 "2022-03-02T20:56:26Z")
Presenter: Dennis Chukwunta Session 3 (Americas-APAC) Friday, March 4th, 00:15 UTC Summary: The wdl2cwl converter project is an attempt to efficiently convert workflows written in the Workflow Description Language to a…
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## [Keynote: Managing copyright and patent protection for open source bioinformatics](https://cwl.discourse.group/t/keynote-managing-copyright-and-patent-protection-for-open-source-bioinformatics/566)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 0\
**Last updated:** [March 1, 2022, 3:25pm UTC](https://cwl.discourse.group/t/keynote-managing-copyright-and-patent-protection-for-open-source-bioinformatics/566 "2022-03-01T15:25:27Z")
Speaker: James Scheibner Session 3 (APAC-Americas) Friday, March 4th, 00:30 UTC Summary: This presentation considers the applicability of so-called intellectual property rights such as patents and copyright protection …
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## [Implementers Panel](https://cwl.discourse.group/t/implementers-panel/564)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 0\
**Last updated:** [March 1, 2022, 12:15pm UTC](https://cwl.discourse.group/t/implementers-panel/564 "2022-03-01T12:15:41Z")
Panelists: Iacopo Colonnelli (StreamFlow) @GlassOfWhiskey / @GlassOfWhiskey Michael Kotliar (cwl-airflow) @obi\_wan\_kenobi Bogdan Gavrilovic (Seven Bridges) Audrius Mečionis (REANA) Pratik Soares @Pratik\_Soares and C…
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## [Homogenization Of Workflow Metadata Without Restriction And User Reeducation](https://cwl.discourse.group/t/homogenization-of-workflow-metadata-without-restriction-and-user-reeducation/554)
**Author:** [@ZimmerA](https://cwl.discourse.group/u/ZimmerA)\
**Replies:** 0\
**Last updated:** [February 27, 2022, 5:22pm UTC](https://cwl.discourse.group/t/homogenization-of-workflow-metadata-without-restriction-and-user-reeducation/554 "2022-02-27T17:22:24Z")
Presenter: Adrian Zimmer Session 1 (Americas-EMEA) Monday, February 28th, 16:25 UTC Summary: The overarching goal of the DataPlant consortium is to enable collaborative research in plant biology according to the FAIR d…
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## [Bioinformatics analysis of single-cell RNA sequencing using CWL](https://cwl.discourse.group/t/bioinformatics-analysis-of-single-cell-rna-sequencing-using-cwl/557)
**Author:** [@obi\_wan\_kenobi](https://cwl.discourse.group/u/obi_wan_kenobi)\
**Replies:** 0\
**Last updated:** [February 27, 2022, 5:42pm UTC](https://cwl.discourse.group/t/bioinformatics-analysis-of-single-cell-rna-sequencing-using-cwl/557 "2022-02-27T17:42:51Z")
Presenter: Michael Kotliar Session 3 (APAC-Americas Friday, March 4th, 02:05 UTC Summary: Here, we provide an outline of the bioinformatics processing of the single-cell RNA sequencing data and clustering of heterogene…
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## [Use of CWL workflows in the SILICOFCM project - Practical Experiences](https://cwl.discourse.group/t/use-of-cwl-workflows-in-the-silicofcm-project-practical-experiences/555)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 0\
**Last updated:** [February 27, 2022, 5:29pm UTC](https://cwl.discourse.group/t/use-of-cwl-workflows-in-the-silicofcm-project-practical-experiences/555 "2022-02-27T17:29:55Z")
Presenter: Miloš Ivanović Authors: Miloš Ivanović, Andreja Živić, Nikolaos Tachos, George Gois, Nenad Filipović, and Dimitrios I. Fotiadis Session 2 (EMEA-APAC) Wednesday, March 2nd, 07:05 UTC Summary: We present expe…
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## [CWL@UMCCR: Enabling efficient, reproducible and portable analysis workflows](https://cwl.discourse.group/t/cwl-umccr-enabling-efficient-reproducible-and-portable-analysis-workflows/556)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 0\
**Last updated:** [February 27, 2022, 5:37pm UTC](https://cwl.discourse.group/t/cwl-umccr-enabling-efficient-reproducible-and-portable-analysis-workflows/556 "2022-02-27T17:37:34Z")
Authors: Sehrish Kanwal, Alexis Lucattini, Oliver Hofmann and the UMCCR team Session 3 (APAC-Americas Friday, March 4th, 00:05 UTC Summary: As part of “The Advanced Genomics Collaboration (TAGC)”, Illumina and the Univ…
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## [CWL Support in Galaxy: Challenges, Design Choices and Progress](https://cwl.discourse.group/t/cwl-support-in-galaxy-challenges-design-choices-and-progress/553)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 0\
**Last updated:** [February 27, 2022, 5:16pm UTC](https://cwl.discourse.group/t/cwl-support-in-galaxy-challenges-design-choices-and-progress/553 "2022-02-27T17:16:21Z")
Presenter: Marius van den Beek Session 1 (Americas-EMEA) Monday, February 28th, 16:05 UTC Summary: In this talk I will present the challenges, the design choices and the progress made towards supporting the execution o…
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## [Arvados: Reproducible CWL Workflows and Data Management at Scale](https://cwl.discourse.group/t/arvados-reproducible-cwl-workflows-and-data-management-at-scale/552)
**Author:** [@tetron](https://cwl.discourse.group/u/tetron)\
**Replies:** 0\
**Last updated:** [February 27, 2022, 5:11pm UTC](https://cwl.discourse.group/t/arvados-reproducible-cwl-workflows-and-data-management-at-scale/552 "2022-02-27T17:11:28Z")
Presenter: Peter Amstutz Session 1 (Americas-EMEA) Monday, February 28th, 15:30 UTC Summary: Arvados is an open source platform for managing, processing, and sharing genomic and other large scientific and biomedical da…
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## [Developing training material for teaching CWL and workflow thinking](https://cwl.discourse.group/t/developing-training-material-for-teaching-cwl-and-workflow-thinking/551)
**Author:** [@douglowe](https://cwl.discourse.group/u/douglowe)\
**Replies:** 0\
**Last updated:** [February 27, 2022, 5:04pm UTC](https://cwl.discourse.group/t/developing-training-material-for-teaching-cwl-and-workflow-thinking/551 "2022-02-27T17:04:29Z")
Authors: Douglas Lowe, Anne Luesink, Gerard Capes, Celia W. G. van Gelder, Fotis E. Posomopoulos, Sarah Wait Zaraneck, Renato Alves, Toby Hodges, Hervé Ménager, Michael Crusoe Session 1 (Americas-EMEA) Monday, February …
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## [Rcwl/RcwlPipelines: Use R to build, read, write, and execute CWL workflows](https://cwl.discourse.group/t/rcwl-rcwlpipelines-use-r-to-build-read-write-and-execute-cwl-workflows/549)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 0\
**Last updated:** [February 27, 2022, 3:53pm UTC](https://cwl.discourse.group/t/rcwl-rcwlpipelines-use-r-to-build-read-write-and-execute-cwl-workflows/549 "2022-02-27T15:53:48Z")
Authors: Qian Liu, Qiang Hu, Alan Hutson, Song Liu, Martin Morgan Session 1 (Americas-EMEA) Monday, February 28th, 14:40 UTC Summary: The Common Workflow Language (CWL) is used to provide portable and reproducible data…
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## [Running CWL workflows in local and cloud infrastructures](https://cwl.discourse.group/t/running-cwl-workflows-in-local-and-cloud-infrastructures/548)
**Author:** [@mrc](https://cwl.discourse.group/u/mrc)\
**Replies:** 0\
**Last updated:** [February 27, 2022, 3:05pm UTC](https://cwl.discourse.group/t/running-cwl-workflows-in-local-and-cloud-infrastructures/548 "2022-02-27T15:05:27Z")
Presenter: Juan Caballero Session 1 (Americas-EMEA) Monday, February 28th, 14:20 UTC Summary: At EBI, we used CWL workflows to run analysis pipelines for metagenomic assembly, as we use the CWL pipeline portability be…
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## [Running CWL Across Computation Engines](https://cwl.discourse.group/t/running-cwl-across-computation-engines/550)
**Author:** [@kannon92](https://cwl.discourse.group/u/kannon92)\
**Replies:** 0\
**Last updated:** [February 27, 2022, 4:52pm UTC](https://cwl.discourse.group/t/running-cwl-across-computation-engines/550 "2022-02-27T16:52:58Z")
Presenter: Kevin Hannon, National Center for Advancing Translational Science - Information Technology Branch; Alex Informatics Session 1 (Americas-EMEA) Monday, February 28th, 15:00 UTC Summary: Image processing has a …
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## [2022 CWL Conference (Feb 28 - Mar 4, 2022)](https://cwl.discourse.group/t/2022-cwl-conference-feb-28-mar-4-2022/519)
**Author:** [@melibleq](https://cwl.discourse.group/u/melibleq)\
**Replies:** 2\
**Last updated:** [February 22, 2022, 5:37pm UTC](https://cwl.discourse.group/t/2022-cwl-conference-feb-28-mar-4-2022/519 "2022-02-22T17:37:24Z")
We are happy to announce the online 2022 Common Workflow Language Conference! Please join us if you are a: User of CWL, at any scale or complexity Workflow engine developer Sysadmin, operation, and/or devop…