CWL - glob an array of output files based on a single input string

CWL Questions
2

I have solved this, and the solution is a bit easier than I thought!

outputs:
  trimmed_fastq:
    type:
      - type: array
        items: File
    outputBinding:
      glob: ["$(inputs.fastq_out)", "*.$(inputs.fastq_out)"]
  trimmed_fastq2:
    type:
      - type: array
        items: File
    outputBinding:
      glob: ["$(inputs.fastq2_out)", "*.$(inputs.fastq2_out)"]
2 Likes