|
About the CWL Questions category
|
|
0
|
348
|
August 8, 2019
|
|
How to exit the workflow if conditions met
|
|
6
|
242
|
March 14, 2023
|
|
Problem with when statements in the workflow with NoneType input for scatter
|
|
3
|
98
|
February 6, 2023
|
|
How can type "File" be incompatible with type "File"?
|
|
4
|
67
|
January 30, 2023
|
|
Workflow step with FIle array for input and output
|
|
1
|
98
|
January 25, 2023
|
|
Error: Duplicate keys not allowed
|
|
1
|
46
|
January 20, 2023
|
|
Collecting logs in a folder: scatter+input array to `ExpressionTool`
|
|
1
|
87
|
January 15, 2023
|
|
Tee for stdout/stderr capture
|
|
1
|
62
|
January 13, 2023
|
|
Cwltool extract inputs
|
|
1
|
71
|
January 3, 2023
|
|
How to read a string from a txt file and wrap it as a CWLype object?
|
|
2
|
55
|
January 2, 2023
|
|
Install python modules when running cwl
|
|
2
|
150
|
December 14, 2022
|
|
Software & libraries to help with development and testing of CWL workflows
|
|
1
|
72
|
December 14, 2022
|
|
How to have configure secondaryFiles to recognize two different patterns for the same file
|
|
1
|
110
|
December 14, 2022
|
|
Running multiple scripts via baseCommand
|
|
1
|
148
|
December 13, 2022
|
|
Is there a way to run upto a particular step in a workflow?
|
|
1
|
77
|
December 12, 2022
|
|
automatically start the process from the last failed step?
|
|
0
|
56
|
December 12, 2022
|
|
Preserving /tmp directory structure
|
|
5
|
158
|
December 2, 2022
|
|
Cannot get `cwltool` to run with `--podman` when step has `DockerRequirement`
|
|
7
|
151
|
December 1, 2022
|
|
Wget CommandLineTool works with v1.0 but not with v1.2
|
|
2
|
78
|
November 24, 2022
|
|
Conformance tests are failing for a certain CWL runner
|
|
8
|
112
|
November 2, 2022
|
|
Override Docker entrypoint in Command Line Tool
|
|
1
|
175
|
October 31, 2022
|
|
Using udocker for CWL Workflows
|
|
1
|
110
|
October 20, 2022
|
|
Use alias to avoid having duplicate run IDs?
|
|
1
|
212
|
October 18, 2022
|
|
How to pass extra switch to docker run command
|
|
5
|
225
|
October 17, 2022
|
|
How to implement a "Reduce" method in CWL?
|
|
2
|
386
|
February 10, 2021
|
|
List of input files in external yaml file
|
|
3
|
233
|
September 30, 2022
|
|
Citing Common Workflow Language
|
|
5
|
151
|
September 12, 2022
|
|
Making an input type: File writable
|
|
5
|
205
|
September 8, 2022
|
|
`cwl-runner` when installing `cwltool` via conda
|
|
2
|
172
|
September 7, 2022
|
|
What is the purpose of `id` and `label` fields on CommandLineTool
|
|
1
|
103
|
August 29, 2022
|