Participants:
- Tazro Inutano Ohta (@inutano) slides, Matrix account
- Tomoya Tanjo (@tom-tan) slides, GitHub profile, Matrix Account
- Tsuyoshi Hachiya: slides, Matrix account
- Manabu ISHII (@manabuishii) GitHub profile, Matrix account
Links mentioned by the participants:
- ep3: GitHub - tom-tan/ep3: A workflow engine for CWL which aims to have a pluggable architecture
- cwl-for-remote-container-template: GitHub - tom-tan/cwl-for-remote-container-template: A template to write CWL documents with VSCode with remote container extension
- zatsu-cwl-generator: GitHub - tom-tan/zatsu-cwl-generator: Simple CWL document generator from given execution commands
- custom Github actions: GitHub Marketplace · Actions to improve your workflow · GitHub
- schema-salad-d (note: not yet stabilized!): GitHub - tom-tan/schema-salad-d: Salad validator library written in D
- DrillHawk: GitHub - tom-tan/drill-hawk: A visualizer of workflow execution records for CWL
- looper “job submitting engine with support for CWL whole workflow/tool scattering”
- Example of using a CWL
ExpressionToolto organize final outputs ebi-metagenomics-cwl/convert-to-v3-layout.cwl at 7bb76f33bf40b5cd2604001cac46f967a209c47f · EBI-Metagenomics/ebi-metagenomics-cwl · GitHub - Common Workflow Language (CWL) Advent Calendar 2021 - Adventar
Some workflows
This recording is also available on ConfTube