Rcwl/RcwlPipelines: Use R to build, read, write, and execute CWL workflows

Authors: Qian Liu, Qiang Hu, Alan Hutson, Song Liu, Martin Morgan

Session 1 (Americas-EMEA) Monday, February 28th, 14:40 UTC

Summary: The Common Workflow Language (CWL) is used to provide portable and reproducible data analysis workflows across different tools and computing environments. We have developed Rcwl, an R interface to CWL, to provide easier development, use and maintenance of CWL pipelines from within R. We have also collected nearly 200 pre-built tools and pipelines in RcwlPipelines, ready to be queried and used by researchers in their own analysis. A single-cell RNA-seq pre-processing pipeline demonstrates use of the software.

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Slides: LiuQ-022822_cwl_conf.pdf - Google Drive

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