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Directory files paths to Array
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1
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286
|
May 30, 2023
|
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Runtime for each step in a workflow
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1
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273
|
May 25, 2023
|
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CWL Yaml file with location urls for directories
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4
|
302
|
May 23, 2023
|
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A typo on CommandLineTool Specification: stdin example
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1
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282
|
May 10, 2023
|
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Using configuration files (json/yaml) to control multiple steps of a CWL workflow
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2
|
441
|
April 20, 2023
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Communicating with CWL via JSON
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1
|
421
|
March 29, 2023
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Equivalent to file.metadata for local environment
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2
|
388
|
March 25, 2023
|
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How to exit the workflow if conditions met
|
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6
|
726
|
March 14, 2023
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Problem with when statements in the workflow with NoneType input for scatter
|
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3
|
432
|
February 6, 2023
|
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How can type "File" be incompatible with type "File"?
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4
|
539
|
January 30, 2023
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Workflow step with FIle array for input and output
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1
|
708
|
January 25, 2023
|
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Error: Duplicate keys not allowed
|
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1
|
302
|
January 20, 2023
|
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Collecting logs in a folder: scatter+input array to `ExpressionTool`
|
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1
|
331
|
January 15, 2023
|
|
Tee for stdout/stderr capture
|
|
1
|
370
|
January 13, 2023
|
|
Cwltool extract inputs
|
|
1
|
316
|
January 3, 2023
|
|
How to read a string from a txt file and wrap it as a CWLype object?
|
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2
|
338
|
January 2, 2023
|
|
Install python modules when running cwl
|
|
2
|
489
|
December 14, 2022
|
|
Software & libraries to help with development and testing of CWL workflows
|
|
1
|
361
|
December 14, 2022
|
|
How to have configure secondaryFiles to recognize two different patterns for the same file
|
|
1
|
368
|
December 14, 2022
|
|
Running multiple scripts via baseCommand
|
|
1
|
498
|
December 13, 2022
|
|
Preserving /tmp directory structure
|
|
5
|
518
|
December 2, 2022
|
|
Cannot get `cwltool` to run with `--podman` when step has `DockerRequirement`
|
|
7
|
633
|
December 1, 2022
|
|
Wget CommandLineTool works with v1.0 but not with v1.2
|
|
2
|
502
|
November 24, 2022
|
|
Conformance tests are failing for a certain CWL runner
|
|
8
|
355
|
November 2, 2022
|
|
Override Docker entrypoint in Command Line Tool
|
|
1
|
524
|
October 31, 2022
|
|
Using udocker for CWL Workflows
|
|
1
|
313
|
October 20, 2022
|
|
Use alias to avoid having duplicate run IDs?
|
|
1
|
478
|
October 18, 2022
|
|
How to pass extra switch to docker run command
|
|
5
|
559
|
October 17, 2022
|
|
How to implement a "Reduce" method in CWL?
|
|
2
|
581
|
February 10, 2021
|
|
List of input files in external yaml file
|
|
3
|
676
|
September 30, 2022
|