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Isolated conda environments for steps in cwltool
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3
|
415
|
March 1, 2022
|
|
Information about `cwltool`
|
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2
|
177
|
February 22, 2022
|
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Move Intermediate files
|
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1
|
130
|
February 22, 2022
|
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Provenance data folder
|
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0
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95
|
February 8, 2022
|
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Set tool output format string from workflow inputs
|
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11
|
301
|
January 20, 2022
|
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On-the-fly document resolving
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1
|
139
|
January 15, 2022
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Scatter and collect stdout per scattered input
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4
|
283
|
January 5, 2022
|
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How to implement a "Reduce" method in CWL?
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3
|
294
|
December 13, 2021
|
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Create/Move output of a tool to a specific location
|
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9
|
1197
|
December 6, 2021
|
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Extract File + SecondaryFiles by ExpressionTool
|
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1
|
235
|
November 24, 2021
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Can't find asdf python installation
|
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2
|
552
|
November 16, 2021
|
|
Singularity not found but installed
|
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1
|
174
|
November 12, 2021
|
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Deferred input for scattered subworkflow?
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2
|
271
|
November 12, 2021
|
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$include instead of $import for run:?
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1
|
161
|
November 11, 2021
|
|
Connect path output (from a tool stdout) to a File input
|
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3
|
300
|
October 28, 2021
|
|
ERROR Tool definition failed validation
|
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1
|
281
|
October 18, 2021
|
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Intermediary outputs are not deleted after workflow completion
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3
|
265
|
October 18, 2021
|
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Best practice for passing in credentials/secrets to docker container
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2
|
304
|
October 18, 2021
|
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DockerRequirement vs ContainerRequirement
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2
|
189
|
October 7, 2021
|
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Using `Directory` as an output type
|
|
1
|
169
|
October 7, 2021
|
|
Docker: Error response from daemon: invalid mount config for type "bind": bind source path does not exist: /tmp/n8phn0ef
|
|
1
|
935
|
October 4, 2021
|
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Cwl-runner - tmpdir not deleted
|
|
9
|
560
|
October 3, 2021
|
|
Running steps conditional on output files not existing
|
|
2
|
239
|
October 2, 2021
|
|
Working offline with singularity
|
|
18
|
933
|
September 30, 2021
|
|
How do you import a remote document using https?
|
|
2
|
242
|
September 30, 2021
|
|
Relative file hierarchy not preserved with respect to cwltool "--outdir"
|
|
2
|
195
|
September 28, 2021
|
|
Interactive CWL workflows (e.g. pop-up to ask user as a step)
|
|
1
|
134
|
September 27, 2021
|
|
Problems with Records not behaving as intended or passing to baseCommand
|
|
11
|
289
|
September 22, 2021
|
|
Custom docker invocation
|
|
1
|
182
|
September 20, 2021
|
|
Cwl-runner and podman
|
|
7
|
682
|
September 10, 2021
|