I have a tool which outputs to stdout a path, e.g.
/my/file.txt and another tool which requires a file. How can i connect one to the other ?
The first tool has in its cwl definition:
... outputs: file_path: type: stdout stdout: path_inside.txt
cat path_inside.txt would give
And the second tool has in its cwl definition:
inputs: in_file: type: File inputBinding: prefix: --in_file
for which i’d like the argument of
--in_file to be
What would be the most elegant way to connect the two in a workflow while preserving the tools definition ?