I’m new to CWL and need some help.
Input: Directory with *fastq.qz files
Output: An Array with file_paths OR Array of Files (this will be used in the second process to scatter through them)
Only got so far that I can print the content of the Directory with this code below:
cwlVersion: v1.0 class: CommandLineTool baseCommand: ls stdout: output.txt inputs: dir: type: Directory inputBinding: position: 1 outputs: example_out: type: stdout