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An example "glue script" in CWL
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3
|
578
|
September 29, 2020
|
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Input arguments in specific position
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2
|
560
|
September 29, 2020
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|
Move files and folders to a given directory
|
|
1
|
470
|
September 27, 2020
|
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Cwltool: flag to disable download to local file system
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3
|
479
|
September 22, 2020
|
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Packaging a CWL workflow as a tool
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2
|
814
|
September 17, 2020
|
|
Get file in Directory
|
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2
|
661
|
September 15, 2020
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Suggestion: default: in CommandInputParameter should allow expressions
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1
|
450
|
September 11, 2020
|
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Conditional in workflow error
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4
|
1308
|
August 21, 2020
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Cwl: pass array of elements with repeated input flags
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1
|
807
|
August 17, 2020
|
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Print out commands in workflow without running them
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2
|
535
|
August 14, 2020
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|
CWL 1.2 released
|
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0
|
920
|
August 10, 2020
|
|
CWL v1.2.0-dev5 (v1.2 release candidate)
|
|
0
|
805
|
July 24, 2020
|
|
Scattering with a directory to store all outputs
|
|
15
|
1831
|
July 10, 2020
|
|
Cwltool as module - Factory with provenance
|
|
0
|
477
|
July 10, 2020
|
|
CWL v1.2.0-dev4 (v1.2 release candidate)
|
|
0
|
499
|
July 6, 2020
|
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How to specify that an input file can be one of several formats?
|
|
3
|
466
|
July 2, 2020
|
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Passing slurm job parameters
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4
|
964
|
July 2, 2020
|
|
InitialWorkDirRequirement create config file with tabs and new line chars
|
|
3
|
518
|
July 2, 2020
|
|
Constructing a default value for a tool input
|
|
4
|
1804
|
June 28, 2020
|
|
Is CWL compatible with PowerShell?
|
|
1
|
447
|
June 19, 2020
|
|
Scatter workflow step n times
|
|
6
|
1397
|
June 8, 2020
|
|
Error while developing FindBadGenomicKmers.cwl
|
|
2
|
633
|
May 30, 2020
|
|
Building CWL tools for BadGenomicsKmers
|
|
0
|
489
|
May 28, 2020
|
|
Build and debug samtools_mpileup.cwl
|
|
7
|
852
|
May 27, 2020
|
|
How to stage secondary files for baseCommand?
|
|
4
|
1215
|
May 27, 2020
|
|
Multiline commands in a single tool
|
|
1
|
852
|
May 26, 2020
|
|
Input array of multiple types
|
|
1
|
535
|
May 26, 2020
|
|
Stdout and log file
|
|
2
|
985
|
May 12, 2020
|
|
Is the order of outputs after a scatter guaranteed?
|
|
1
|
696
|
May 11, 2020
|
|
Validate a CommandLineTool in-memory
|
|
1
|
402
|
May 4, 2020
|